Daily Sepsis Research Analysis
Analyzed 14 papers and selected 3 impactful papers.
Summary
Three impactful sepsis studies span mechanistic immunometabolism, AI-enabled early detection, and sedation strategy in sepsis-associated AKI. A Clinical Epigenetics paper implicates HK3-driven glycolysis and histone lactylation in monocyte hyperinflammation; a PRISMA-registered systematic review charts growing explainability yet biomarker gaps in sepsis ML models; and a large MIMIC-IV cohort links midazolam to higher 30-day mortality than propofol, partly mediated by metabolic acidosis.
Research Themes
- Immunometabolic and epigenetic regulation of monocyte inflammation in sepsis
- Explainable machine learning for early sepsis detection and biomarker alignment
- Sedation strategies and outcomes in sepsis-associated acute kidney injury
Selected Articles
1. Hexokinase 3 promoted cytokine production of monocytes by targeting metabolic reprogramming and histone lactylation in sepsis.
Integrative transcriptomic and single-cell analyses identify HK3 upregulation in sepsis and implicate it as a strong diagnostic biomarker. Functional experiments show HK3 enhances glycolysis and lactate-driven H3K18 lactylation to activate IL-6/TNF-α, while HK3 knockdown attenuates cytokine release, nominating HK3 as a therapeutic target.
Impact: This work links immunometabolism to epigenetic regulation in sepsis, revealing a tractable node (HK3) that couples glycolysis to histone lactylation and cytokine transcription.
Clinical Implications: HK3 could serve as a blood-based diagnostic marker and a therapeutic target to curb monocyte-driven hyperinflammation; translation will require in vivo validation and safety of metabolic/epigenetic modulators.
Key Findings
- HK3 expression is significantly elevated in peripheral blood of sepsis patients and shows strong diagnostic performance by ROC analysis.
- Single-cell RNA sequencing demonstrates increased HK3 specifically in monocytes, alongside increased monocyte infiltration.
- In LPS-stimulated monocytes, HK3 boosts glycolysis and lactate accumulation, driving IL-6 and TNF-α expression via H3K18 lactylation; HK3 knockdown suppresses this response.
Methodological Strengths
- Multi-layer evidence integrating GEO datasets, immune infiltration analysis, and single-cell RNA sequencing
- Mechanistic validation linking metabolic flux to epigenetic modification (H3K18 lactylation) with functional knockdown
Limitations
- Lack of in vivo (animal or clinical) validation to confirm translatability
- Use of LPS-induced monocyte models may not capture full complexity of human sepsis
Future Directions: Validate HK3’s diagnostic and therapeutic potential in animal sepsis models and prospective clinical cohorts; explore pharmacologic HK3 inhibition or modulation of histone lactylation.
Sepsis is a life-threatening organ dysfunction caused by a dysregulated host immune response to infection, and there is currently a lack of early rapid identification and effective treatment methods. During the pathogenesis of sepsis, immune cells such as monocytes exhibit abnormal activation of aerobic glycolysis. However, the mechanism of glycolysis in immune cells during sepsis remains to be elucidated. Here, we investigated the role of glycolysis-related regulatory genes in the development of sepsis. Through analysis of the GEO database, we found that HK3 is significantly elevated in the peripheral blood of sepsis patients. Receiver operating characteristic (ROC) curve analysis demonstrated that HK3, as a novel metabolic checkpoint, serves as an excellent diagnostic biomarker for sepsis. Immune cell infiltration analysis revealed a significant increase in monocyte infiltration in the peripheral blood of sepsis patients. Single-cell RNA sequencing analysis demonstrated a significant increase in HK3 expression in monocytes from the sepsis group compared to the control group. Using an LPS-induced monocyte sepsis model, we found that HK3 boosts glycolytic activity and lactate accumulation. Mechanistically, this enhances inflammatory cytokine secretion through H3K18 lactylation-dependent activation of IL-6 and TNF-α genes. Notably, targeted HK3 knockdown effectively suppressed this pro-inflammatory cascade, highlighting its critical role in sepsis pathogenesis. Our findings not only establish HK3 as a key metabolic regulator in sepsis but also elucidate its molecular mechanism in driving excessive monocyte-mediated inflammation. Moreover, we identify HK3 as a promising therapeutic target for mitigating hyperinflammatory responses in sepsis.
2. Machine learning for early detection and prediction of sepsis: explainability and key sepsis biomarkers representation-A systematic review.
Across 37 Sepsis-3–based studies, use of explainability in ML sepsis prediction markedly increased over time, yet biologically specific markers (CRP/PCT) rarely ranked among top predictors. The review highlights data-collection biases and poor reproducibility (heterogeneous features, local datasets, limited code/data sharing) as barriers to clinically meaningful, generalizable models.
Impact: This PRISMA-registered synthesis quantifies explainability adoption and exposes a consistent biomarker-model disconnect, guiding the field toward pathophysiology-aligned, reproducible sepsis prediction.
Clinical Implications: Encourages harmonized data collection including routine CRP/PCT, multi-center external validation, and open science practices to improve clinical trust and utility of sepsis ML tools.
Key Findings
- Inclusion of 37 adult Sepsis-3–based ML studies with a registered protocol (CRD420251101470).
- Explainability methods showed ~67% greater odds of use per year over 2019–2025.
- CRP and procalcitonin rarely appeared among top predictive features, indicating a pathophysiology–model gap.
- Generalizability and reproducibility are limited by heterogeneous features, local datasets, and sparse code/data sharing.
Methodological Strengths
- PRISMA-compliant systematic review with protocol registration
- Independent dual-reviewer screening and quantitative trend assessment
Limitations
- Heterogeneity in study designs and features likely precluded meta-analysis of performance
- Reliance on local datasets and limited code/data sharing constrain reproducibility
Future Directions: Develop multi-center prospective datasets with standardized biomarker collection, enforce transparent reporting (e.g., TRIPOD-AI), and mandate external validation and code/data sharing.
OBJECTIVE: To systematically review machine learning-based sepsis prediction studies, examining model explainability and the extent to which explanations reflect key sepsis biomarkers. DATA SOURCES: Following the PRISMA guidelines, we reviewed the titles, abstracts, and full texts. The search was conducted in four major bibliographic databases with publication dates from January 1, 2019 to July 16, 2025. STUDY SELECTION: The included studies provided a clear definition of sepsis based on the Sepsis-3 criteria and involved critically ill adult human subjects. DATA EXTRACTION AND SYNTHESIS: Two authors (IP and AKa) independently reviewed and assessed each study. Using statistical methods, we assessed study quality and explainability trends. RESULTS: A total of 37 studies were included. Our analysis revealed a notable temporal increase (≈67% greater odds per year) in the use of explainability methods in sepsis prediction models. However, key sepsis biomarkers (procalcitonin or C-reactive protein) were not among the top predictive features, highlighting a gap between the model output and known sepsis pathophysiology. DISCUSSION: Model attributions often mirror what electronic health records measure most consistently (vital signs) rather than what is most biologically specific, partly due to the high missingness and irregular sampling of CRP/PCT in public datasets. Heterogeneity in feature selection and reliance on local datasets limit generalizability, while sparse code/data sharing constrains reproducibility. CONCLUSION: This review newly quantifies the rise of explainability use in sepsis prediction and identifies a consistent gap between model explanations and key sepsis biomarkers, providing a foundation for future work to bridge data-driven insights with sepsis pathophysiology. SYSTEMATIC REVIEW REGISTRATION NUMBER: CRD420251101470.
3. Propofol versus Midazolam With 30-Day Mortality in Sepsis-Associated Acute Kidney Injury: A MIMIC-IV Analysis.
In 3335 S-AKI patients, midazolam (HR≈1.95) and propofol+midazolam (HR≈1.57) were associated with higher 30-day mortality than propofol alone; findings persisted with IPTW and across subgroups. Mediation analyses suggest metabolic acidosis partially explains the excess risk with midazolam.
Impact: Large, rigorously adjusted observational analysis informs sedation choice in a high-risk sepsis population and proposes a plausible metabolic mechanism.
Clinical Implications: Favor propofol over midazolam for sedation in S-AKI when feasible; monitor and mitigate metabolic acidosis, while awaiting prospective trials to confirm causality.
Key Findings
- Among 3335 S-AKI patients, midazolam monotherapy (HR 1.945) and combination therapy (HR 1.573) were associated with higher 30-day mortality than propofol monotherapy after multivariable adjustment.
- Results remained consistent after inverse probability of treatment weighting and across subgroups.
- Mediation analysis indicated metabolic acidosis mediated 15.84% (midazolam alone) and 10.21% (combination) of the increased mortality risk.
Methodological Strengths
- Large ICU database (MIMIC-IV) with robust multivariable adjustment and IPTW
- Use of survival analyses and mediation analysis to explore mechanisms
Limitations
- Observational design susceptible to residual confounding and confounding by indication
- Single health system dataset limits generalizability; dosing and sedation depth details may be incomplete
Future Directions: Prospective, ideally randomized trials comparing sedation strategies in S-AKI with standardized monitoring of acid-base status and kidney outcomes.
INTRODUCTION: Propofol and midazolam are commonly used sedatives in patients with sepsis-associated acute kidney injury (S-AKI), yet the association of their combined use on patient prognosis remains unclear. This study aimed to compare the associations of propofol monotherapy, midazolam monotherapy, and their combination with 30-day mortality in S-AKI patients. METHODS: This study analyzed 3335 S-AKI patients from the Medical Information Mart for Intensive Care IV database, categorized by sedation strategy: no sedation, propofol alone, midazolam alone, or combination therapy. The primary outcome was 30-day all-cause mortality. Associations were assessed using Kaplan-Meier survival analysis, Cox proportional hazards models, and inverse probability of treatment weighting. Subgroup and mediation analyses were also performed. RESULTS: After multivariable adjustment, both midazolam monotherapy (hazard ratio [HR] = 1.945, 95% confidence interval: 1.519-2.490) and combination therapy (HR = 1.573, 95% confidence interval: 1.275-1.942) were associated with significantly increased 30-day mortality risk compared to propofol monotherapy. This finding was consistent after inverse probability of treatment weighting (HR = 1.742 and 1.328, respectively). Subgroup analyses generally supported this trend across different populations. Mediation analysis indicated that metabolic acidosis significantly mediated part of the increased mortality risk associated with midazolam (alone: 15.84%; combined: 10.21%). CONCLUSIONS: Propofol monotherapy was associated with more significant survival benefits compared to midazolam monotherapy or combination therapy. Metabolic acidosis is a key pathological mechanism mediating this difference, which has important guiding value for improving the prognosis of this high-risk population.